Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
SARC rs2564926 chr3:53094730 G/A 1.68E-8 256 4.88 31.97 32.4 KM Plot
SARC rs266513 chr1:182434486 A/G 4.94E-8 254 31.42 35.13 6.72 KM Plot
SARC rs266514 chr1:182434837 G/A 5.43E-8 253 31.27 35.13 6.72 KM Plot
SARC rs266515 chr1:182435174 C/T 5.43E-8 253 31.27 35.13 6.72 KM Plot
SARC rs2675691 chr10:88453874 A/G 7.89E-5 258 32.13 32.37 9.53 KM Plot
SARC rs267871 chr1:182456947 T/C 1.86E-7 256 31.1 35.13 6.72 KM Plot
SARC rs267880 chr1:182449651 C/T 1.54E-7 258 31.1 34.88 6.72 KM Plot
SARC rs267881 chr1:182449781 G/T 1.54E-7 258 31.1 34.88 6.72 KM Plot
SARC rs267897 chr1:182445004 T/A 1.77E-7 256 31.27 34 6.72 KM Plot
SARC rs267898 chr1:182446097 C/A 1.92E-7 255 31.27 34.88 6.72 KM Plot
SARC rs267901 chr1:182446581 T/C 1.8E-7 256 31.1 34.88 6.72 KM Plot
SARC rs267903 chr1:182447174 A/T 1.54E-7 258 31.1 34.88 6.72 KM Plot
SARC rs267904 chr1:182447454 C/A 1.54E-7 258 31.1 34.88 6.72 KM Plot
SARC rs2748942 chr6:76434879 T/C 0 249 1.07 37.67 31.42 KM Plot
SARC rs2761819 chr11:34979888 T/C 6.84E-5 256 20.17 29.88 33.48 KM Plot